- #Mirth connect channel auto queue of errors how to
- #Mirth connect channel auto queue of errors install
- #Mirth connect channel auto queue of errors software
- #Mirth connect channel auto queue of errors code
Press the Play button (looks like a green arrow near the bottom of the interface).A step you will need to take using Mirth Connect if you have this kind of input. As you might expect, these HL7 messages have already been converted to XML files since that is the only thing the pipeline can process.Use any editor to view the files in the input directory.Notice the incoming data location (Input Directory in the Collection Reader section).In this example we can tell these should be HL7 messages. This is a good practice to use as it may not be easy to discern just by looking at the input file names. The descriptor file names and directory names contain a designation of what kind of data being dealt with.SharpNormalization_XMLTree -> desc -> collectionprocessingengine -> MayoLabsHL7CPE.xml.You will see a Java Application configured: Launch UIMA_CPE_GUI-sharpnnormalizationXMLTree In Eclipse: Run -> Run Configurations.Command line: Change to the SHARPN_FRAMEWORK_HOME directory and execute runCPE.sh|bat.It is left to the reader to study the descriptor in the GUI or in its XML format.
This descriptor defines things like the location of input and output data, the mechanism by which to process the collection of input, and what documents are being passed in and processed.
The CPE is configured by a file called a descriptor. The UIMA Collection Processing Engine (CPE) is used to run the pipeline. Test sample data with default pipeline configuration Set SHARPN_LOG_DIR=/usr/local/sharpdn/logs
#Mirth connect channel auto queue of errors code
#Mirth connect channel auto queue of errors software
Mirth Connect software also serves to take CEM objects off the end of the Data Normalization pipeline and place them in to various other formats, for example, a DBMS. Channels are set up to serve this purpose. Incoming data is recognized, potentially transformed, and sent to a processing location.
We have chosen Mirth Connect as the application to move original data to the right place and in the right format for the Data Normalization pipeline. Mirth Connect and CouchDB represents steps 1, 2, 4, and 5 as seen in the overview. Everything within the Data Normalization box, from the Initializer to Generate CEM.
#Mirth connect channel auto queue of errors install
The pipeline install and UIMA-AS represents step 3 in the overview. While Mirth Connect is technically optional you will find it indispensable for feeding the pipeline and for transforming the resulting output.
#Mirth connect channel auto queue of errors how to
However, this presumes that you have the appropriate input data and that you know how to invoke UIMA collection processing. The Data Normalization pipeline can be invoked on its own, that is without Mirth Connect.